LncBase Predicted v.2
Help
Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
We have updated the bulk download module, which simplifies the download process! Please find the new online form by following this link
Deprecated!
This version is deprecated. Users are strongly advised to only use the latest, up-to-date versions of DIANA-Tools and Databases.
Please follow this link to navigate to the latest database version.

hsa-miR-223-3p


or   Search by location
Loading... Please wait, this might take a few seconds...



Go to Experimental module
Filters

Gene
miRNA
Score
DIANA Links
RP11-973H7.1
hsa-miR-223-3p
1.000
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000563722
Biotype: lincRNA
Gene id: ENSG00000260302
Gene Name: RP11-973H7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
110-124
0.246
1
LA16c-316G12.2
hsa-miR-223-3p
1.000
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000569831
Biotype: antisense
Gene id: ENSG00000260425
Gene Name: LA16c-316G12.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
315-340
0.221
1
XLOC_003038
hsa-miR-223-3p
1.000
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006435
Biotype: transcript isomorph
Gene id: XLOC_003038
Gene Name: XLOC_003038
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
174-195
0.134
0
7mer
685-693
0.033
0
7mer
344-354
0.026
0
RP11-369F10.2
hsa-miR-223-3p
1.000
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000412137
Biotype: antisense
Gene id: ENSG00000230575
Gene Name: RP11-369F10.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
281-301
0.178
9
chr22-38_28785274-29006793.1
hsa-miR-223-3p
1.000
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623644
Biotype: lincRNA
Gene id: ENSG00000279978
Gene Name: chr22-38_28785274-29006793.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
240792-240811
0.012
0
8mer
123451-123477
0.010
3
7mer
34998-35012
0.009
2
7mer
148705-148723
0.007
2
7mer
26269-26283
0.006
2
8mer
102259-102277
0.006
0
7mer
165598-165610
0.005
3
7mer
41322-41342
0.005
1
8mer
97712-97728
0.005
1
7mer
178491-178496
0.004
1
8mer
166670-166687
0.004
0
7mer
40478-40490
0.004
0
7mer
114052-114069
0.003
2
7mer
98927-98950
0.003
0
6mer
2864-2875
0.003
7
7mer
217057-217066
0.003
1
7mer
55170-55183
0.003
0
6mer
135730-135751
0.002
4
7mer
229751-229775
0.002
0
6mer
7257-7265
0.002
5
6mer
79679-79683
0.002
1
6mer
47760-47777
0.002
2
6mer
208932-208940
0.002
1
6mer
108878-108882
0.002
0
6mer
46752-46776
0.002
1
8mer+mismatch
258484-258509
0.002
1
8mer+mismatch
259798-259818
0.002
2
6mer
90449-90467
0.002
4
6mer
87304-87331
0.002
2
6mer
66127-66152
0.002
0
6mer
179809-179823
0.002
3
6mer
211251-211274
0.002
2
6mer
61227-61238
0.002
1
6mer
207573-207592
0.002
2
6mer
194998-195018
0.002
4
6mer
49079-49093
0.002
4
6mer
151812-151835
0.001
1
6mer
243997-244015
0.001
1
6mer
32317-32321
0.001
0
6mer
15827-15841
0.001
1
6mer
118944-118948
0.001
1
6mer
114481-114503
0.001
Not Conserved
6mer
62886-62909
0.001
1
6mer
36355-36373
0.001
0
6mer
171332-171340
0.001
1
6mer
265544-265557
0.001
0
6mer
196110-196129
0.001
0
6mer
256307-256322
0.001
1
6mer
102578-102605
0.001
3
6mer
193726-193737
0.001
0
6mer
219557-219569
0.001
2
6mer
111762-111766
0.001
0
6mer
67020-67031
0.001
0
6mer
198891-198912
0.001
2
6mer
28423-28442
0.001
1
6mer
57995-58009
0.001
1
6mer
5398-5422
0.001
1
6mer
108520-108530
0.001
4
6mer
211979-211995
0.001
1
6mer
26378-26398
0.001
3
6mer
223196-223206
0.001
1
6mer
138024-138038
0.001
Not Conserved
6mer
187981-187992
0.001
1
6mer
257962-257979
0.001
0
6mer
199661-199680
0.001
0
6mer
97376-97402
0.001
1
6mer
148248-148265
0.001
1
6mer
53102-53116
0.001
1
6mer
117399-117413
0.001
0
6mer
208251-208265
0.001
1
6mer
142910-142925
0.001
3
6mer
214542-214551
0.001
1
6mer
124473-124495
0.001
1
6mer
46845-46856
0.001
1
6mer
202598-202619
0.001
Not Conserved
6mer
162496-162513
0.001
0
6mer
117404-117418
0.001
3
6mer
67074-67087
0.000
0
6mer
214542-214556
0.000
1
6mer
97394-97411
0.000
1
AC022007.5
hsa-miR-223-3p
1.000
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000420091
Biotype: lincRNA
Gene id: ENSG00000206567
Gene Name: AC022007.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
221-238
0.151
0
6mer
958-980
0.011
0
8mer
679-697
0.009
Not Conserved
6mer
1143-1169
0.002
Not Conserved
AL022344.7
hsa-miR-223-3p
1.000
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000568976
Biotype: lincRNA
Gene id: ENSG00000259869
Gene Name: AL022344.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
56-76
0.143
0
6mer
93-98
0.023
0
XLOC_008802
hsa-miR-223-3p
1.000
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018496
Biotype: transcript isomorph
Gene id: XLOC_008802
Gene Name: XLOC_008802
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
72-93
0.164
2
XLOC_009222
hsa-miR-223-3p
1.000
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019399
Biotype: transcript isomorph
Gene id: XLOC_009222
Gene Name: XLOC_009222
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
663-675
0.149
0
6mer
1357-1370
0.008
0
RP11-46H11.3
hsa-miR-223-3p
1.000
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000503695
Biotype: lincRNA
Gene id: ENSG00000250790
Gene Name: RP11-46H11.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2815-2836
0.124
0
6mer
2600-2619
0.010
0
6mer
223-244
0.010
0
6mer
1640-1659
0.003
0
RP5-828H9.1
hsa-miR-223-3p
1.000
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000430097
Biotype: lincRNA
Gene id: ENSG00000230563
Gene Name: RP5-828H9.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
14-34
0.142
3
KCNQ1OT1
hsa-miR-223-3p
1.000
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000597346
Biotype: antisense
Gene id: ENSG00000269821
Gene Name: KCNQ1OT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4-13
0.041
0
9mer
1344-1358
0.014
1
7mer
15758-15780
0.008
0
8mer
40788-40796
0.006
0
7mer
25543-25559
0.005
0
7mer
13874-13883
0.004
Not Conserved
7mer
69886-69893
0.004
0
7mer
88523-88538
0.004
1
7mer
43169-43177
0.004
0
8mer
53312-53339
0.004
0
7mer
82332-82342
0.003
0
7mer
82318-82341
0.003
1
7mer
42888-42905
0.003
0
7mer
6439-6450
0.003
1
7mer
36935-36961
0.003
Not Conserved
6mer
58237-58255
0.003
5
6mer
60346-60367
0.002
3
7mer
31281-31296
0.002
0
6mer
21294-21304
0.002
1
6mer
70462-70483
0.002
2
6mer
24967-24988
0.002
1
6mer
53506-53529
0.002
1
6mer
10747-10755
0.002
0
6mer
33216-33238
0.002
0
6mer
25679-25700
0.002
0
6mer
61221-61238
0.001
1
6mer
14695-14709
0.001
0
6mer
23261-23268
0.001
1
6mer
74934-74942
0.001
2
6mer
64553-64557
0.001
1
6mer
54381-54395
0.001
3
6mer
56092-56109
0.001
1
6mer
79078-79100
0.001
1
6mer
62790-62809
0.001
Not Conserved
6mer
53443-53461
0.001
1
6mer
82302-82321
0.000
1
RP11-691G17.1
hsa-miR-223-3p
0.999
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000567488
Biotype: lincRNA
Gene id: ENSG00000261826
Gene Name: RP11-691G17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2369-2391
0.130
1
AC006262.5
hsa-miR-223-3p
0.999
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000598518
Biotype: lincRNA
Gene id: ENSG00000268621
Gene Name: AC006262.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
441-450
0.128
0
XLOC_001305
hsa-miR-223-3p
0.999
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003529
Biotype: transcript isomorph
Gene id: XLOC_001305
Gene Name: XLOC_001305
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
140-158
0.128
4
MIR6818
hsa-miR-223-3p
0.999
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624945
Biotype: antisense
Gene id: ENSG00000279159
Gene Name: MIR6818
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
12557-12570
0.017
4
8mer
11578-11590
0.012
0
8mer
10130-10148
0.010
0
7mer
29829-29855
0.010
2
8mer
17260-17283
0.005
0
7mer
19121-19129
0.005
2
8mer
28745-28765
0.005
1
7mer
41770-41793
0.005
1
6mer
48807-48816
0.004
3
9mer
38319-38337
0.004
1
7mer
9207-9220
0.004
1
7mer
30638-30646
0.004
1
7mer
7096-7101
0.003
1
7mer
11394-11420
0.003
1
6mer
32852-32861
0.003
3
6mer
27305-27314
0.003
3
6mer
44851-44872
0.002
4
6mer
17366-17374
0.002
1
6mer
28259-28279
0.002
6
7mer
43630-43647
0.002
1
6mer
25227-25244
0.002
1
6mer
48803-48820
0.002
2
6mer
38345-38365
0.002
5
6mer
34189-34197
0.002
3
6mer
45390-45413
0.002
1
6mer
34636-34646
0.002
1
6mer
20634-20646
0.002
1
6mer
45732-45755
0.002
2
6mer
39484-39494
0.001
3
6mer
46444-46468
0.001
1
6mer
41276-41292
0.001
0
6mer
11502-11509
0.001
1
6mer
38868-38889
0.001
0
UPP2-IT1
hsa-miR-223-3p
0.999
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000439185
Biotype: sense_intronic
Gene id: ENSG00000237327
Gene Name: UPP2-IT1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
315-332
0.126
3
XLOC_003873
hsa-miR-223-3p
0.999
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008418
Biotype: transcript isomorph
Gene id: XLOC_003873
Gene Name: XLOC_003873
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Ovary Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
286-294
0.063
0
7mer
167-179
0.057
0
KB-1183D5.13
hsa-miR-223-3p
0.999
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000416405
Biotype: lincRNA
Gene id: ENSG00000206142
Gene Name: KB-1183D5.13
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
74-89
0.115
1
6mer
1363-1389
0.003
0
RP11-495P10.8
hsa-miR-223-3p
0.999
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000434245
Biotype: lincRNA
Gene id: ENSG00000231196
Gene Name: RP11-495P10.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
541-556
0.118
0
Funded by:
We have placed cookies on your device to help make this website and the services we offer better. By using this site, you agree to the use of cookies. Learn more
I accept